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SOP for Data Coding, Cleaning, and Quality Checks

Posted on September 1, 2025 digi By digi

SOP for Data Coding, Cleaning, and Quality Checks

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Published on 21/12/2025

Standard Operating Procedure for Data Coding, Cleaning, and Quality Checks

Department Clinical Research
SOP No. CR/DATA/053/2025
Supersedes NA
Page No. 1 of 22
Issue Date 26/08/2025
Effective Date 01/09/2025
Review Date 01/09/2026

Table of Contents

Toggle
  • Purpose
  • Scope
  • Responsibilities
  • Accountability
  • Procedure
  • Abbreviations
  • Documents
  • References
  • Approval Section
  • Annexures
  • Revision History

Purpose

The purpose of this SOP is to define procedures for coding, cleaning, and performing quality checks on clinical trial

data. These steps ensure accuracy, consistency, and regulatory compliance, supporting reliable statistical analysis and reporting.

Scope

This SOP applies to data managers, statisticians, investigators, CROs, and sponsors involved in clinical trial data management. It covers adverse event coding, concomitant medication coding, data cleaning, discrepancy resolution, and quality assurance of clinical trial datasets.

See also  SOP for EC Quorum and Conflict of Interest Handling

Responsibilities

  • Data Manager: Ensures proper data coding, cleaning, and execution of quality checks.
  • Investigator: Reviews coded data for accuracy and medical appropriateness.
  • CRA/Monitor: Verifies transcription accuracy during monitoring visits.
  • Sponsor/CRO: Provides oversight and ensures regulatory compliance in data management processes.
  • QA Officer: Audits data coding and cleaning processes for adherence to SOPs and global standards.

Accountability

The Data Manager is accountable for implementing coding, cleaning, and quality checks, while the sponsor ensures compliance with regulatory expectations and inspection readiness.

Procedure

1. Data Coding
Use standardized dictionaries (e.g., MedDRA for adverse events, WHO-DD for medications).
Code terms consistently across datasets.
Document coding decisions in Coding Log (Annexure-1).

2. Data Cleaning
Identify discrepancies such as missing data, inconsistent entries, or out-of-range values.
Generate and resolve data queries as per SOP for Data Query Management.
Document resolutions in Data Cleaning Log (Annexure-2).

3. Quality Checks
Perform routine quality checks (logic checks, cross-variable checks, range checks).
Verify completeness and accuracy of CRFs against source documents.
Maintain audit trail of all checks in Quality Check Log (Annexure-3).

4. Review and Approval
Data manager reviews cleaned datasets before database lock.
PI reviews medically coded terms for accuracy.
Sponsor signs off final data prior to submission.

5. Archiving
Archive coding dictionaries, logs, and final datasets in TMF.
Retain records for a minimum of 15 years or as per local requirements.

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Abbreviations

  • SOP: Standard Operating Procedure
  • CRF: Case Report Form
  • CRA: Clinical Research Associate
  • CRO: Clinical Research Organization
  • QA: Quality Assurance
  • TMF: Trial Master File
  • MedDRA: Medical Dictionary for Regulatory Activities
  • WHO-DD: World Health Organization Drug Dictionary

Documents

  1. Coding Log (Annexure-1)
  2. Data Cleaning Log (Annexure-2)
  3. Quality Check Log (Annexure-3)

References

  • ICH E6(R2) – Good Clinical Practice
  • US FDA – Data Management and Coding Guidance
  • EMA – Data Integrity Standards
  • CDSCO – Clinical Data Management Guidelines
  • WHO – Data Quality Management in Clinical Research

Version: 1.0

Approval Section

Prepared By Rajesh Kumar, Clinical Data Manager
Checked By Sunita Reddy, QA Officer
Approved By Dr. Anil Sharma, Principal Investigator

Annexures

Annexure-1: Coding Log

Date Variable Coding Dictionary Code Assigned Reviewed By
12/09/2025 Adverse Event – Headache MedDRA v25.0 10019211 Data Manager

Annexure-2: Data Cleaning Log

Date Subject ID Discrepancy Resolution Resolved By
13/09/2025 CT2025-SITE01-171 Missing lab value Updated Study Coordinator

Annexure-3: Quality Check Log

Date Check Performed Result Corrective Action Verified By
15/09/2025 Out-of-range check Value corrected Updated CRF CRA

Revision History

Revision Date Revision No. Revision Details Reason for Revision Approved By
26/08/2025 00 Initial version New SOP creation Head, Clinical Research

For more SOPs visit: Pharma SOP

Global SOPs (Applicable to all Agencies), SOP for GCP Tags:CDSCO data coding requirements, data cleaning SOP, data coding SOP, data quality checks SOP, EMA data management SOP, FDA clinical data coding guidance, SOP for adverse event coding, SOP for ALCOA+ data cleaning, SOP for audit readiness data coding, SOP for clinical trial data management standards -->, SOP for consistency checks, SOP for CRF data checks, SOP for CRO data quality SOP, SOP for data validation programs, SOP for discrepancy management, SOP for inspection compliance data quality, SOP for interim database review, SOP for ISF data records, SOP for lab data coding, SOP for MedDRA coding, SOP for query resolution data cleaning, SOP for reconciliation of datasets, SOP for sponsor oversight data coding, SOP for TMF data management logs, SOP for WHO-DD drug coding, WHO data cleaning SOP

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